The Mystery of Seahorse Key’s Missing Bird Colony Veers Into Strange Territory

Russian submarines? Black-ops helicopters? Vigilante sheepdogs? Cannibal snakes? Weird theories abound for the causes of the baffling case.

The first thing Captain Kenny McCain noticed at Seahorse Key was that something was wrong with the sky. It was a drizzly morning in April 2015, the first break in a freak spring squall that had lashed Florida鈥檚 Gulf Coast for two days. Captain Kenny, as he鈥檚 known around Cedar Key, the Big Bend fishing town where his family has lived for seven generations, had motored his skiff three miles to the outermost island of the Cedar Keys National Wildlife Refuge. He was planning to check on the facilities of the Seahorse Key Marine Laboratory, to see how the University of Florida research station had weathered the storm.

Captain Kenny knows the island better than most. After 24 years as an officer of the refuge, he left the U.S. Fish & Wildlife Service in 2014 to take up with the lab, shuttling students and scientists out to the wild, 165-acre island they shared with an alarmingly dense population of cottonmouth snakes and some 10,000 to 20,000 colonial nesting birds. He was a half-mile from the dock when he noticed something that made him change course: The skies above Seahorse were eerily empty.

Swinging his boat around to the island鈥檚 west side, he pulled in next to a mangrove-shrouded peninsula, typically the epicenter of the Seahorse Key rookery. He killed the motor and was stunned by silence. Two days earlier, the chatter of pelicans, cormorants, and maybe 10 different species of wading birds had been all but deafening. Now the only sound he heard was the rhythmic swoosh of waves against the beach.

When deputy refuge manager Larry Woodward answered his cell phone that afternoon, he recognized Captain Kenny鈥檚 drawl. 鈥淕ot a problem out at Seahorse,鈥 he heard Kenny say. 鈥淵ou ain鈥檛 got no birds out here.鈥

Predators. Parasites. Disease. Food-supply disruptions. There are a handful of perfectly prosaic reasons why colonial birds might call it quits on a spot where they鈥檝e nested for decades. Colony abandonment, as biologists call it, is fairly commonplace, though it鈥檚 usually a gradual affair and rarely affects a wide swath of species at once, seeing as one bird鈥檚 precise habitat, prey, or foraging ground is often little more than scenery to its neighbor.

But then there are the Roanokes of the avian world: colony abandonments so massive, abrupt, and unexpected that they leave behind little more than empty nests and riddles. What kind of cataclysm prompts thousands of birds to leave a season鈥檚 worth of eggs they鈥檝e invested tremendous energy into laying and incubating? How does so Vesuvian a disturbance escape our notice? What factors determine whether a colony ever returns鈥攁nd if it doesn鈥檛, what fallout awaits the ecosystem it鈥檚 left behind?

A few weeks after Captain Kenny鈥檚 visit, national media including NPR and The Rachel Maddow Show picked up the story of the mysterious abandonment at Seahorse Key, and managers at the Cedar Keys Wildlife Refuge suddenly found themselves bombarded with citizen theories: invasive pythons, magnetic anomalies, monitor lizards, underwaters methane gas bubbles . . . even black-ops government helicopters. 鈥淲e heard all those and more,鈥 says Woodward. 鈥淭he best was the Russian submarine that was offshore testing a new sonic weapon. That was a guy from Texas who called in鈥攈e obviously doesn鈥檛 realize how shallow it is out there.鈥

鈥淲e couldn鈥檛 get a submarine within 10 miles of here,鈥 Vic Doig, Cedar Keys鈥 fire-management officer and de facto wildlife biologist, says with a laugh. In the wake of the abandonment, though, people just wanted answers鈥攈owever outlandish. 鈥淵ou couldn鈥檛 go anywhere in town where everyone wasn鈥檛 talking about it. They鈥檇 mob us: 鈥榃hat鈥檚 going on? Where did the birds go?鈥 鈥

One sweltering afternoon in August, Doig and Woodward led a photographer and me out to Seahorse Key, searching for remnants of what was once the largest bird colony on Florida鈥檚 Gulf Coast. We tromped across a ribbon of golden-sand beach and into a swampy tangle of black mangroves, palms, cacti, and the occasional sprawling live oak. The ground was covered with crunchy palm fronds and, in the marshier spots, the thin, upward-pointing pencil roots of the mangroves, like spiky shag carpeting. Zipper spiders the size of baseballs clung to webs between trees, and Doig reminded us to keep our eyes peeled for the venomous (and potentially deadly) cottonmouths.

鈥淭his was ground zero,鈥 he said, gesturing here and there at rickety remnants of nests scattered through the multi-story growth. Before the abandonment, he explained, seemingly every branch was occupied by Great Egrets, Great Blue Herons, Tricolored Herons, Snowy Egrets, Roseate Spoonbills, and other wading birds. Brown Pelicans and Double-crested Cormorants crowded the beaches. White Ibises, though less site faithful than their colony-mates, were often so plentiful that they took to nesting on cacti鈥攁lthough they were scarce around Seahorse that spring, which is either a clue or red herring, depending on whom you ask. Most nesting birds around Cedar Keys aren鈥檛 migratory; they simply follow good foraging around Florida and throughout the Gulf. And yet, while the colony鈥檚 numbers have fluctuated, the birds have reliably returned to Seahorse every March through August or so since at least the early 1900s.

Two days after Captain Kenny鈥檚 phone call, Doig arrived at Seahorse with a delegation of University of Florida biologists looking for answers. There wasn鈥檛 a straggler bird in sight, Doig remembers. The place was 鈥渆mpty, desolate, not a single bird, nothing.鈥 It smelled too, a sulfuric stench from the tens of thousands of rotting eggs that littered the ground. The researchers wondered: Could predators have done this? The island鈥檚 cottonmouths have historically left birds alone, preferring to feed on fish scraps the birds drop, and they also keep the island鈥檚 rat population in check. Neighboring islands, though, have substantial numbers of raccoons sometimes known to swim over. Could a whole posse have invaded and terrorized the birds into fleeing?

Probably not, says wildlife ecologist Peter Frederick, one of the UF professors called to investigate. The eggs had been scavenged sometime after nests were abandoned, he explains鈥攍ikely by Fish Crows, judging from the visible peck holes in the scattered eggs. Raccoons, by contrast, would have crushed them. What鈥檚 more, says Frederick, the Seahorse colony has weathered raccoon incursions for decades. The researchers saw little scat and just a few paw prints, and when they set traps on beaches where invasive raccoons tend to loiter, they caught none. 鈥淚f there were a lot of raccoons out there,鈥 he says, 鈥渨e would have seen it.鈥

The investigators did turn up some 20 dead birds and one dead rat鈥攁n unremarkable number of carcasses for so big a rookery鈥攁nd sent them off to two federal wildlife labs focused on forensics and pathology. Neither came back with any evidence of predation, parasites, or disease (though the rat, Woodward says, apparently had a hemorrhoid).

Once we鈥檇 seen our fill of skeletal nests, Woodward motored us a couple of miles east to another refuge island, called Snake Key, just 39 acres and equally jungly. Before the abandonment, it had hosted only a few nesting Tricolored Herons, but Doig estimates as many as a third of the birds from Seahorse resettled there in the days and weeks following the exodus in 2015. Nearly every species was represented, and many pulled off late broods. The fact that birds bred successfully so nearby suggests that they didn鈥檛 leave Seahorse for lack of food resources鈥攁 theory also undercut by the fact that varied diets across species make it an unlikely culprit, and no fisheries data suggest a food-supply crisis.

Which brings us back to those covert government helicopters. Maybe.

With so many natural disturbances seemingly ruled out, the refuge detectives considered human disturbance. Moderate man-on-bird harassment isn鈥檛 unheard of around the refuge, and Woodward and other officers have issued citations for things like illegal camping, boating, and fishing around Seahorse during its protective spring closure, even private helicopters landing on other refuge islands. 鈥淭o get a whole colony abandoning because of human disturbance,鈥 says Frederick, who鈥檚 ridden a clamorous airboat right up alongside rookeries in the Everglades, 鈥測ou鈥檇 have to have something pretty large.鈥

Refuge officials have received unconfirmed reports from Cedar Key locals claiming to have seen, at great distance, one or more helicopters over Seahorse during the stormy nights before Captain Kenny鈥檚 discovery. Of course, they鈥檝e also received reports of submarines. But the notion of government aircraft is less farfetched.

鈥淎nyone who spends a fair bit of time out here by the water has seen military aircraft,鈥 says Doig, who once had a screaming pair of A-10 jets interrupt a shorebird survey. Nearby Air Force bases fly maneuvers along the sparsely developed coast. More nefarious operators are drawn there, too, so Coast Guard, Homeland Security, and Drug Enforcement Administration operations aren鈥檛 uncommon. Of course, none of these agencies are inclined to reveal their flight plans, but Doig says the refuge staff, via unofficial interagency chatter, has reason to believe there was 鈥渁viation activity in the area that week.鈥

鈥淭he most likely scenario,鈥 he says, stressing that it鈥檚 based on hearsay and speculation, 鈥渨as that it happened at night, and the pilots would have been flying with night vision. So imagine 10,000 warm-blooded birds just lighting up the sky to some guy who works off infrared, who might have gone over to check it out. And then, yeah鈥攁ll of a sudden they鈥檇 have just started coming up in waves and waves.鈥

But once a stubborn colony is sitting on eggs, even a Chinook full of rappelling paratroopers may not be enough to displace it鈥攏ot by itself, anyway. Which is why Doig, Woodward, and Frederick all suspect a combination of factors at play on Seahorse Key: maybe some increased predation, some colony-wide jitters from the storms or lack of White Ibises, plus a traumatic visit from an aircraft. Stress in a colony is often cumulative, says Steve Kress, 爆料公社鈥檚 vice president for bird conservation and director of its Seabird Restoration Program. 鈥淧eople see, all of a sudden, a longstanding colony go away,鈥 he says, 鈥渂ut they鈥檙e only seeing this final phase, and there鈥檚 probably been trouble there already.鈥

Dan Roby, a wildlife ecologist at Oregon State University and a scientist with the Oregon Cooperative Fish and Wildlife Research Unit, suspects cumulative disturbance is to blame for the mass abandonment of the world鈥檚 largest Double-crested Cormorant colony this past summer. In mid-May, somewhere in the span of three days, around 16,000 birds deserted eggs on East Sand Island, at the mouth of the Columbia River. 鈥淲e couldn鈥檛 understand how something like this could happen,鈥 says Roby, who has long been involved with research and monitoring on the island.

East Sand Island鈥檚 cormorants, however, are the targets of a controversial Army Corps of Engineers culling program, which seeks to more than halve the number of breeding pairs in order to protect salmon and steelhead smolts that cormorants feed upon. In 2015, federal wildlife officers shot more than 2,300 cormorants and oiled eggs in some 5,000 nests, a technique that prevents hatching by cutting the flow of oxygen through the shell. When researchers on Roby鈥檚 team alerted him to the abandonment, his early suspicion was that some righteous defender had motored out and loosed a sheepdog on the colony, preferring to see it abandoned than let any more birds get shot.

But neither the Corps鈥 investigators nor Roby鈥檚 colleagues monitoring terns on the other side of the island could find any evidence of humans or predators making landfall. The Corps points to more than a dozen Bald Eagles spotted lurking around the colony鈥檚 empty nests, but Roby thinks these were opportunistic scavengers. The simplest explanation fitting the evidence, he says, is that the cormorants were repelled by cumulative stress from the oiling (which flushes birds and invites egg-snatching gulls), the shootings (which result in mateless birds and failed breeding attempts), and the associated human presence.

鈥淭hey got to some sort of disturbance threshold they couldn鈥檛 tolerate any longer,鈥 Roby speculates, 鈥渁nd once large numbers started to abandon, basically the colony collapsed and everybody left.鈥

Particularly when multiple stressors are involved, there鈥檚 merit to the notion of a 鈥渢ipping point,鈥 says Kress鈥攁 certain number of birds that, once disturbed enough to flee, prompt the rest to up and join them out of something like peer pressure. It鈥檚 how Neil Shook, refuge manager at North Dakota鈥檚 Chase Lake National Wildlife Refuge, explains another Roanoke-style abandonment from more than a decade ago. In summer 2004, the refuge鈥檚 nesting colony of 30,000 American White Pelicans suddenly scattered, leaving behind eggs and chicks. It鈥檚 conjecture, Shook admits, but he suspects a combination of disturbances: a bad year for tiger salamanders (a key food source), a late cold snap, and coyote predation on a peninsular subset of the colony, whose panicked evacuation was enough to 鈥渟care up鈥 the island-dwelling remainder.

Two years later Chase Lake鈥檚 pelicans came back in record numbers. This past July several thousand of East Sand Island鈥檚 displaced cormorants returned and laid second clutches of eggs. Down on the Gulf, meanwhile, Seahorse Key remained empty this year, despite Doig and Frederick鈥檚 efforts to seed the nesting grounds with decoys (a technique that鈥檚 been successful with some species of waterbirds).

The White Ibises, all but missing from the refuge in 2015, returned in greater numbers last spring, but they nested on Snake Key, which this year hosted some 6,000 to 8,000 birds, approaching half of what once settled on Seahorse. So given that most individual ibises weren鈥檛 actually around for the exodus, what鈥檚 keeping them from the excellent habitat at Seahorse?

鈥淭here鈥檚 both attraction and repulsion going on,鈥 says Frederick. Seahorse evacuees that went to Snake last year will likely keep returning there, sticking with what worked the season before, and other birds will simply follow the leader, because that鈥檚 what colonial birds do. Doig suspects two new, small colonies north of the refuge also consist of former Seahorse birds, and each good season there helps overwrite whatever attraction they once had to their old nesting site. Some birds did occasionally roost on Seahorse this year, which seems like progress鈥攍ast year, the biologists say, birds wouldn鈥檛 even fly over it.

鈥淚t鈥檚 something we might not give birds credit for, but their memory is very good,鈥 says Kress. 鈥淲hat happens in one year at a particular place, they just remember it. And if it鈥檚 a bad experience, they鈥檙e not going to go back there.鈥

Not everyone around Cedar Key believes government helicopters spooked the birds. Not John McPherson, who鈥檚 on the board of the Friends of the Lower Suwannee and Cedar Keys National Wildlife Refuges. His theory? 鈥淲e have a lot of boats that come in and anchor for the night,鈥 he says. 鈥淪omebody on one of those had a pet monkey, and they couldn鈥檛 handle it anymore, so they thought, 鈥榃e鈥檒l just release it on the deserted island here!鈥 鈥 When I ask why the primate hasn鈥檛 been found, McPherson smiles tongue-in-cheekily. 鈥淲ell, it鈥檚 a very evasive monkey.鈥

Not Barbara Maple, who for years ran the bird-focused travel company Tidewater Tours with her husband, Captain Doug Maple (currently vice president of Cedar Key鈥檚 爆料公社 chapter). Barbara points to a new sign the FWS put on the island in 2015, citing a piece of Old Florida lore about Pelican Island, a wildlife refuge on the state鈥檚 eastern coast. When that refuge opened in 1903, it鈥檚 said that none other than the 爆料公社 erected a welcome sign; the pelicans skedaddled, returning only after the sign was removed.

And not Captain Kenny McCain, who brought us out for one more visit to Seahorse the day after we toured the island with Doig and Woodward. Captain Kenny doubts reports of helicopters and blames predation. In the weeks after abandonment, he says, he spotted two adult and three juvenile eagles cruising the island, and he trapped several raccoons鈥攏ot on beaches where researchers were looking, but on the other end of the island, near the Seahorse Key Marine Laboratory. The thousands of ibis missing that spring, he thinks, made the colony extra vulnerable.

鈥淵ou know how they like to nest in big colonies for protection?鈥 asked the burly, bearded captain, standing at the helm of his boat. 鈥淚 think they lost that. The rest were jittery, and something just triggered them鈥攑redator-prey stuff.鈥

With us was Coleman Sheehy III, then the marine laboratory鈥檚 associate director (since September, a professor of natural sciences at Santa Fe College in Gainesville). Sheehy says the only bigger mystery than what scared off the birds is what will happen to Seahorse without them. For 15 years he鈥檚 studied the relationship between the island鈥檚 birds and cottonmouths. He and several other researchers have a paper in the works exploring whether that relationship is mutualistic: the sloppy-feeding birds providing fish morsels for snakes, the hungry snakes loitering below the nests and thereby deterring raccoons. When Kenny first called him with news of the abandonment, Sheehy didn鈥檛 believe him.

鈥淚 was terrified this was going to be it for the snakes on Seahorse Key,鈥 he says, 鈥渁nd the whole system we鈥檝e been studying that鈥檚 so unique is going to be gone.鈥

In search of snakes, Sheehy led us on a beach walk while Captain Kenny hung back at the lab. (鈥淭hree things in the world I鈥檓 scared of,鈥 he said, 鈥渁nd that鈥檚 my mama, my wife, and snakes, in about that order.鈥) Here and there, we watched Sheehy stroll into the trees and stir up leaf litter using a hooked pole called a stump ripper. But when an hour of searching uncovered zero snakes, he sighed. 鈥淎 couple of years ago,鈥 he said, 鈥淚 could have turned over just a few fronds and found you one.鈥

Daytime isn鈥檛 ideal for spotting nocturnal cottonmouths, but even Sheehy鈥檚 nighttime surveys suggest snakes are hurting on Seahorse鈥攁long a transect where he once commonly found 30 snakes a night, he鈥檚 now lucky to count 10. In fact, after two birdless seasons, Seahorse鈥檚 predator-prey dynamic is getting biblically weird: The cottonmouths are eating each other for lack of food. Long accustomed to their piscine meal ticket, Seahorse鈥檚 snakes tend to be both larger than their mainland counterparts (some more than five feet long) and more docile. The island has some rats, skinks, and squirrels, but the snakes aren鈥檛 great at catching them; consequently, Sheehy has found fewer and skinnier snakes this year, with two documented incidents of snake-on-snake cannibalism. 

Suddenly, Sheehy gave a little cry and dropped to his knees. 鈥淲ow!鈥 he exclaimed, frantically placing his cupped hands over divots in the dirt where I saw only the tiniest blur of movement. Then he stood, triumphantly holding a slender, four-inch lizard with a chrome-ish back and a bright amber tail. A Cedar Key mole skink, he said, unique to these islands. Before releasing it, he handed it to me and said proudly, 鈥淵ou鈥檙e now one of the few people ever to have held this species.鈥

As much as he hates to see Seahorse鈥檚 snake population crash, Sheehy expects Snake Key鈥檚 small resident population will surge, now that birds have begun nesting there. And he鈥檚 excited to witness a transitional shift, to realize with each post-abandonment year new ways that the birds have shaped the island鈥檚 ecology鈥攆or example, through the huge nutrient influx of their guano. He gestured at the tiny tracks left by the retreating skink. 鈥淭he food web here is complex,鈥 he said, 鈥渁nd that鈥檚 just one species that has potentially, either directly or indirectly, benefited from the birds.鈥

Whether and how other species are impacted depends, of course, on how long the birds stay gone. And trying to predict that is like searching for a phantom evasive monkey. As we motored back to town, passing by Snake Key, Captain Kenny mentioned that the island once hosted its own thriving rookery. The birds gradually stopped nesting there in the early 1950s, he said. Again, no one really knows why.

鈥淛ust nature doing its thing,鈥 Captain Kenny said. 鈥淪o it鈥檚 been, what, 70 years? Maybe we鈥檒l leave notes for our grand-youngins in 70 years and have them see if the birds come back to Seahorse.鈥